TRANSCRIPTION TARGET GENE SET ENRICHMENT RESULTS

	WEB-based GEne SeT AnaLysis Toolkit

	*Translating gene lists into biological insights...*

User data and parameters: User data: textAreaUpload.txt, Organism: hsapiens, Id Type: ensembl_gene_stable_id, Ref Set: entrezgene, Significance Level: Top10, Statistics Test: Hypergeometric, MTC: BH, Minimum: 2

This table lists the enriched transcription factor targets (TFT), number of Entrez IDs in your user data set for the TFT, the corresponding Entrez IDs, and the statistics for the enriched TF.
The statistic column lists:

C: the number of reference genes in the category
O: the number of genes in the gene set and also in the category
E: the expected number in the category
R: ratio of enrichment
rawP: p value from hypergeometric test
adjP: p value adjusted by the multiple test adjustment

Finally, the number of user gene ids is linked to a table with information about the user ids, and the Entrez IDs are linked to Entrez Gene.

TFT	#Gene	EntrezGene	Statistics
hsa_V$AP2_Q3	4	1108 23054 23125 7094	C=249;O=4;E=0.30;R=13.32;rawP=0.0002;adjP=0.0033
hsa_GGGCGGR_V$SP1_Q6	12	25777 1981 23054 7916 7094 9632 2802 8943 1108 9828 6878 2011	C=2891;O=12;E=3.49;R=3.44;rawP=0.0001;adjP=0.0033
hsa_V$MZF1_02	4	23054 23125 7916 8289	C=231;O=4;E=0.28;R=14.36;rawP=0.0002;adjP=0.0033
hsa_V$SPZ1_01	4	1981 23125 1108 140901	C=225;O=4;E=0.27;R=14.74;rawP=0.0002;adjP=0.0033
hsa_GGGAGGRR_V$MAZ_Q6	11	1981 23125 7916 9632 29123 8943 6597 1108 8289 9828 2011	C=2250;O=11;E=2.71;R=4.05;rawP=6.32e-05;adjP=0.0033
hsa_V$YY1_02	4	1981 8943 1108 6878	C=239;O=4;E=0.29;R=13.88;rawP=0.0002;adjP=0.0033
hsa_V$AP2_Q6_01	4	23054 23125 1108 8289	C=265;O=4;E=0.32;R=12.52;rawP=0.0003;adjP=0.0042
hsa_V$AP2_Q6	3	23125 7094 8289	C=256;O=3;E=0.31;R=9.72;rawP=0.0037;adjP=0.0176
hsa_V$NFKAPPAB_01	3	3054 25777 1108	C=250;O=3;E=0.30;R=9.95;rawP=0.0034;adjP=0.0176
hsa_GCCATNTTG_V$YY1_Q6	4	23054 8943 9828 6878	C=419;O=4;E=0.51;R=7.92;rawP=0.0016;adjP=0.0176

WebGestalt is currently developed and maintained by Jing Wang and Bing Zhang at the Zhang Lab. Other people who have made significant contribution to the project include Dexter Duncan, Stefan Kirov, Zhiao Shi, and Jay Snoddy.

Funding credits: NIH/NIAAA (U01 AA016662, U01 AA013512); NIH/NIDA (P01 DA015027); NIH/NIMH (P50 MH078028, P50 MH096972); NIH/NCI (U24 CA159988); NIH/NIGMS (R01 GM088822).